J6_5LZF_001

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5LZF|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZF|1|A|G|45
5LZF|1|A|G|46
*
5LZF|1|A|C|179
5LZF|1|A|G|180
5LZF|1|A|A|181
5LZF|1|A|A|182
5LZF|1|A|C|183
*
5LZF|1|A|G|214
5LZF|1|A|G|215
5LZF|1|A|A|216
5LZF|1|A|A|217
5LZF|1|A|A|218
5LZF|1|A|A|219
5LZF|1|A|G|220
5LZF|1|A|A|221
5LZF|1|A|A|222
5LZF|1|A|A|223
5LZF|1|A|U|224
*
5LZF|1|A|A|231
5LZF|1|A|G|232
5LZF|1|A|A|233
5LZF|1|A|U|234
5LZF|1|A|U|235
*
5LZF|1|A|A|262
5LZF|1|A|G|263
5LZF|1|A|C|264
5LZF|1|A|A|265
5LZF|1|A|G|266
*
5LZF|1|A|C|426
5LZF|1|A|U|427
5LZF|1|A|A|428
5LZF|1|A|A|429
5LZF|1|A|A|430
5LZF|1|A|U|431
5LZF|1|A|A|432
5LZF|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34