J6_5M1J_001
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5M1J|1|14|A|67, 5M1J|1|14|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|14|G|22
5M1J|1|14|A|23
5M1J|1|14|G|24
5M1J|1|14|U|25
5M1J|1|14|A|26
5M1J|1|14|C|27
*
5M1J|1|14|G|58
5M1J|1|14|G|59
5M1J|1|14|A|60
5M1J|1|14|A|61
5M1J|1|14|A|62
5M1J|1|14|A|63
5M1J|1|14|G|64
5M1J|1|14|A|65
5M1J|1|14|A|66
5M1J|1|14|A|67
5M1J|1|14|C|68
*
5M1J|1|14|G|75
5M1J|1|14|G|76
5M1J|1|14|A|77
5M1J|1|14|U|78
5M1J|1|14|U|79
*
5M1J|1|14|A|106
5M1J|1|14|A|107
5M1J|1|14|A|108
5M1J|1|14|A|109
5M1J|1|14|G|110
*
5M1J|1|14|C|321
5M1J|1|14|U|322
5M1J|1|14|A|323
5M1J|1|14|A|324
5M1J|1|14|A|325
5M1J|1|14|U|326
5M1J|1|14|A|327
5M1J|1|14|U|328
5M1J|1|14|U|329
5M1J|1|14|G|330
5M1J|1|14|G|331
*
5M1J|1|44|C|32
5M1J|1|44|A|33
5M1J|1|44|U|34
5M1J|1|44|C|35
Current chains
- Chain 14
- 25S ribosomal RNA
- Chain 44
- 5.8S ribosomal RNA
Nearby chains
- Chain C5
- 60S ribosomal protein L4-A
- Chain L5
- 60S ribosomal protein L13-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain h5
- 60S ribosomal protein L35-A
- Chain i5
- 60S ribosomal protein L36-A
- Chain j5
- 60S ribosomal protein L37-A
Coloring options: