J6_5M1J_002
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5M1J|1|14|G|2418, 5M1J|1|14|A|2799, 5M1J|1|14|A|2801, 5M1J|1|14|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|14|U|2416
5M1J|1|14|U|2417
5M1J|1|14|G|2418
5M1J|1|14|A|2419
*
5M1J|1|14|U|2611
5M1J|1|14|U|2612
5M1J|1|14|U|2613
5M1J|1|14|G|2614
*
5M1J|1|14|C|2627
5M1J|1|14|A|2628
*
5M1J|1|14|U|2650
5M1J|1|14|G|2651
5M1J|1|14|U|2652
5M1J|1|14|C|2653
*
5M1J|1|14|G|2754
5M1J|1|14|C|2755
5M1J|1|14|C|2756
5M1J|1|14|U|2757
5M1J|1|14|A|2758
5M1J|1|14|U|2759
5M1J|1|14|C|2760
5M1J|1|14|G|2761
5M1J|1|14|A|2762
5M1J|1|14|U|2763
5M1J|1|14|C|2764
5M1J|1|14|C|2765
*
5M1J|1|14|G|2793
5M1J|1|14|G|2794
5M1J|1|14|U|2795
5M1J|1|14|G|2796
5M1J|1|14|C|2797
5M1J|1|14|C|2798
5M1J|1|14|A|2799
5M1J|1|14|G|2800
5M1J|1|14|A|2801
5M1J|1|14|A|2802
5M1J|1|14|A|2803
5M1J|1|14|A|2804
Current chains
- Chain 14
- 25S ribosomal RNA
Nearby chains
- Chain A3
- Transfer RNA; tRNA
- Chain A5
- 60S ribosomal protein L2-A
- Chain N5
- 60S ribosomal protein L15-A
- Chain Q5
- 60S ribosomal protein L18-A
- Chain T5
- 60S ribosomal protein L21-A
- Chain a5
- 60S ribosomal protein L28
- Chain b5
- 60S ribosomal protein L29
- Chain o5
- 60S ribosomal protein L42-B
Coloring options: