Loop J6_5MC6

3D structure

PDB id: 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 5MC6|1|BQ|A|67, 5MC6|1|BQ|U|329, 5MC6|1|BS|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5MC6|1|BQ|G|22
5MC6|1|BQ|A|23
5MC6|1|BQ|G|24
5MC6|1|BQ|U|25
5MC6|1|BQ|A|26
5MC6|1|BQ|C|27
*
5MC6|1|BQ|G|58
5MC6|1|BQ|G|59
5MC6|1|BQ|A|60
5MC6|1|BQ|A|61
5MC6|1|BQ|A|62
5MC6|1|BQ|A|63
5MC6|1|BQ|G|64
5MC6|1|BQ|A|65
5MC6|1|BQ|A|66
5MC6|1|BQ|A|67
5MC6|1|BQ|C|68
*
5MC6|1|BQ|G|75
5MC6|1|BQ|G|76
5MC6|1|BQ|A|77
5MC6|1|BQ|U|78
5MC6|1|BQ|U|79
*
5MC6|1|BQ|A|106
5MC6|1|BQ|A|107
5MC6|1|BQ|A|108
5MC6|1|BQ|A|109
5MC6|1|BQ|G|110
*
5MC6|1|BQ|C|321
5MC6|1|BQ|U|322
5MC6|1|BQ|A|323
5MC6|1|BQ|A|324
5MC6|1|BQ|A|325
5MC6|1|BQ|U|326
5MC6|1|BQ|A|327
5MC6|1|BQ|U|328
5MC6|1|BQ|U|329
5MC6|1|BQ|G|330
5MC6|1|BQ|G|331
*
5MC6|1|BS|C|32
5MC6|1|BS|A|33
5MC6|1|BS|U|34
5MC6|1|BS|C|35

Current chains

Chain BQ: 25S ribosomal RNA
Chain BS: 5.8S ribosomal RNA

Nearby chains

Chain AC: 60S ribosomal protein L36-A
Chain AF: 60S ribosomal protein L37-A
Chain AJ: 60S ribosomal protein L13-A
Chain AQ: 60S ribosomal protein L15-A
Chain BE: 60S ribosomal protein L4-A
Chain BP: 60S ribosomal protein L35-A

J6_5MC6_001