Loop J6_5MEI

3D structure

PDB id: 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of Agelastatin A bound to the 80S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length: 42 nucleotides
Bulged bases: 5MEI|1|AR|A|67, 5MEI|1|AR|U|329, 5MEI|1|AT|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5MEI|1|AR|G|22
5MEI|1|AR|A|23
5MEI|1|AR|G|24
5MEI|1|AR|U|25
5MEI|1|AR|A|26
5MEI|1|AR|C|27
*
5MEI|1|AR|G|58
5MEI|1|AR|G|59
5MEI|1|AR|A|60
5MEI|1|AR|A|61
5MEI|1|AR|A|62
5MEI|1|AR|A|63
5MEI|1|AR|G|64
5MEI|1|AR|A|65
5MEI|1|AR|A|66
5MEI|1|AR|A|67
5MEI|1|AR|C|68
*
5MEI|1|AR|G|75
5MEI|1|AR|G|76
5MEI|1|AR|A|77
5MEI|1|AR|U|78
5MEI|1|AR|U|79
*
5MEI|1|AR|A|106
5MEI|1|AR|A|107
5MEI|1|AR|A|108
5MEI|1|AR|A|109
5MEI|1|AR|G|110
*
5MEI|1|AR|C|321
5MEI|1|AR|U|322
5MEI|1|AR|A|323
5MEI|1|AR|A|324
5MEI|1|AR|A|325
5MEI|1|AR|U|326
5MEI|1|AR|A|327
5MEI|1|AR|U|328
5MEI|1|AR|U|329
5MEI|1|AR|G|330
5MEI|1|AR|G|331
*
5MEI|1|AT|C|32
5MEI|1|AT|A|33
5MEI|1|AT|U|34
5MEI|1|AT|C|35

Current chains

Chain AR: 25S ribosomal RNA
Chain AT: 5.8S ribosomal RNA

Nearby chains

Chain CF: 60S ribosomal protein L4-A
Chain CN: 60S ribosomal protein L13-A
Chain CP: 60S ribosomal protein L15-A
Chain DJ: 60S ribosomal protein L35-A
Chain DK: 60S ribosomal protein L36-A
Chain DL: 60S ribosomal protein L37-A

J6_5MEI_003