J6_5MEI_004
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5MEI|1|AR|G|2418, 5MEI|1|AR|C|2760, 5MEI|1|AR|A|2799, 5MEI|1|AR|A|2801, 5MEI|1|AR|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MEI|1|AR|U|2416
5MEI|1|AR|U|2417
5MEI|1|AR|G|2418
5MEI|1|AR|A|2419
*
5MEI|1|AR|U|2611
5MEI|1|AR|U|2612
5MEI|1|AR|U|2613
5MEI|1|AR|G|2614
*
5MEI|1|AR|C|2627
5MEI|1|AR|A|2628
*
5MEI|1|AR|U|2650
5MEI|1|AR|G|2651
5MEI|1|AR|U|2652
5MEI|1|AR|C|2653
*
5MEI|1|AR|G|2754
5MEI|1|AR|C|2755
5MEI|1|AR|C|2756
5MEI|1|AR|U|2757
5MEI|1|AR|A|2758
5MEI|1|AR|U|2759
5MEI|1|AR|C|2760
5MEI|1|AR|G|2761
5MEI|1|AR|A|2762
5MEI|1|AR|U|2763
5MEI|1|AR|C|2764
5MEI|1|AR|C|2765
*
5MEI|1|AR|G|2793
5MEI|1|AR|G|2794
5MEI|1|AR|U|2795
5MEI|1|AR|G|2796
5MEI|1|AR|C|2797
5MEI|1|AR|C|2798
5MEI|1|AR|A|2799
5MEI|1|AR|G|2800
5MEI|1|AR|A|2801
5MEI|1|AR|A|2802
5MEI|1|AR|A|2803
5MEI|1|AR|A|2804
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain CS
- 60S ribosomal protein L18-A
- Chain CV
- 60S ribosomal protein L21-A
- Chain DC
- 60S ribosomal protein L28
- Chain DD
- 60S ribosomal protein L29
- Chain DQ
- 60S ribosomal protein L42-A
Coloring options: