J6_5MMI_001

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GACAAC*GGAAAAGAAAG*CGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

5MMI|1|A|A|45, 5MMI|1|A|A|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MMI|1|A|G|44
5MMI|1|A|A|45
5MMI|1|A|C|46
*
5MMI|1|A|G|163
5MMI|1|A|A|164
5MMI|1|A|C|165
5MMI|1|A|A|166
5MMI|1|A|A|167
5MMI|1|A|C|168
*
5MMI|1|A|G|199
5MMI|1|A|G|200
5MMI|1|A|A|201
5MMI|1|A|A|202
5MMI|1|A|A|203
5MMI|1|A|A|204
5MMI|1|A|G|205
5MMI|1|A|A|206
5MMI|1|A|A|207
5MMI|1|A|A|208
5MMI|1|A|G|209
*
5MMI|1|A|C|216
5MMI|1|A|G|217
5MMI|1|A|A|218
5MMI|1|A|U|219
5MMI|1|A|U|220
*
5MMI|1|A|A|247
5MMI|1|A|G|248
5MMI|1|A|C|249
5MMI|1|A|A|250
5MMI|1|A|G|251
*
5MMI|1|A|C|438
5MMI|1|A|U|439
5MMI|1|A|A|440
5MMI|1|A|A|441
5MMI|1|A|A|442
5MMI|1|A|U|443
5MMI|1|A|A|444
5MMI|1|A|C|445

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34, chloroplastic