J6_5MMI_002
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUC*GG*CGUG*CCUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5MMI|1|A|U|2090, 5MMI|1|A|U|2407, 5MMI|1|A|G|2445, 5MMI|1|A|A|2447, 5MMI|1|A|U|2448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MMI|1|A|U|2088
5MMI|1|A|U|2089
5MMI|1|A|U|2090
5MMI|1|A|A|2091
*
5MMI|1|A|U|2260
5MMI|1|A|U|2261
5MMI|1|A|U|2262
5MMI|1|A|C|2263
*
5MMI|1|A|G|2275
5MMI|1|A|G|2276
*
5MMI|1|A|C|2298
5MMI|1|A|G|2299
5MMI|1|A|U|2300
5MMI|1|A|G|2301
*
5MMI|1|A|C|2401
5MMI|1|A|C|2402
5MMI|1|A|U|2403
5MMI|1|A|U|2404
5MMI|1|A|A|2405
5MMI|1|A|G|2406
5MMI|1|A|U|2407
5MMI|1|A|G|2408
5MMI|1|A|A|2409
5MMI|1|A|U|2410
5MMI|1|A|C|2411
5MMI|1|A|C|2412
*
5MMI|1|A|G|2438
5MMI|1|A|C|2439
5MMI|1|A|U|2440
5MMI|1|A|C|2441
5MMI|1|A|A|2442
5MMI|1|A|A|2443
5MMI|1|A|C|2444
5MMI|1|A|G|2445
5MMI|1|A|G|2446
5MMI|1|A|A|2447
5MMI|1|A|U|2448
5MMI|1|A|A|2449
5MMI|1|A|A|2450
5MMI|1|A|A|2451
5MMI|1|A|A|2452
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L33, chloroplastic
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain C
- 50S ribosomal protein L2, chloroplastic
- Chain M
- plastid ribosomal protein uL15c
- Chain X
- plastid ribosomal protein bL27c
- Chain Y
- plastid ribosomal protein bL28c
- Chain z
- E-site tRNA
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