J6_5NDK_003
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 5NDK|1|1H|A|213
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDK|1|1H|G|44
5NDK|1|1H|C|45
*
5NDK|1|1H|G|169
5NDK|1|1H|G|170
5NDK|1|1H|A|171
5NDK|1|1H|A|172
5NDK|1|1H|C|173
*
5NDK|1|1H|G|204
5NDK|1|1H|G|205
5NDK|1|1H|A|206
5NDK|1|1H|G|207
5NDK|1|1H|A|208
5NDK|1|1H|G|209
5NDK|1|1H|G|210
5NDK|1|1H|A|211
5NDK|1|1H|A|212
5NDK|1|1H|A|213
5NDK|1|1H|G|214
*
5NDK|1|1H|C|221
5NDK|1|1H|G|222
5NDK|1|1H|A|223
5NDK|1|1H|C|224
5NDK|1|1H|U|225
*
5NDK|1|1H|A|252
5NDK|1|1H|C|253
5NDK|1|1H|C|254
5NDK|1|1H|A|255
5NDK|1|1H|G|256
*
5NDK|1|1H|C|455
5NDK|1|1H|U|456
5NDK|1|1H|A|457
5NDK|1|1H|A|458
5NDK|1|1H|G|459
5NDK|1|1H|U|460
5NDK|1|1H|A|461
5NDK|1|1H|C|462
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain J8
- 50S ribosomal protein L28
- Chain P8
- 50S ribosomal protein L34
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