J6_5NDK_004
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5NDK|1|1H|U|2101, 5NDK|1|1H|A|2403, 5NDK|1|1H|U|2405, 5NDK|1|1H|G|2443, 5NDK|1|1H|A|2445, 5NDK|1|1H|U|2446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDK|1|1H|U|2099
5NDK|1|1H|U|2100
5NDK|1|1H|U|2101
5NDK|1|1H|A|2102
*
5NDK|1|1H|U|2258
5NDK|1|1H|U|2259
5NDK|1|1H|U|2260
5NDK|1|1H|G|2261
*
5NDK|1|1H|C|2273
5NDK|1|1H|G|2274
*
5NDK|1|1H|C|2296
5NDK|1|1H|G|2297
5NDK|1|1H|C|2298
5NDK|1|1H|C|2299
*
5NDK|1|1H|G|2399
5NDK|1|1H|C|2400
5NDK|1|1H|C|2401
5NDK|1|1H|U|2402
5NDK|1|1H|A|2403
5NDK|1|1H|G|2404
5NDK|1|1H|U|2405
5NDK|1|1H|G|2406
5NDK|1|1H|A|2407
5NDK|1|1H|A|2408
5NDK|1|1H|C|2409
5NDK|1|1H|C|2410
*
5NDK|1|1H|G|2436
5NDK|1|1H|A|2437
5NDK|1|1H|U|2438
5NDK|1|1H|C|2439
5NDK|1|1H|A|2440
5NDK|1|1H|A|2441
5NDK|1|1H|C|2442
5NDK|1|1H|G|2443
5NDK|1|1H|G|2444
5NDK|1|1H|A|2445
5NDK|1|1H|U|2446
5NDK|1|1H|A|2447
5NDK|1|1H|A|2448
5NDK|1|1H|A|2449
5NDK|1|1H|A|2450
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 78
- 50S ribosomal protein L15
- Chain I8
- 50S ribosomal protein L27
- Chain J8
- 50S ribosomal protein L28
- Chain Q8
- 50S ribosomal protein L35
- Chain V1
- Transfer RNA; tRNA
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