J6_5NGM_001

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GGCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

5NGM|1|AA|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|G|45
5NGM|1|AA|C|46
5NGM|1|AA|C|47
*
5NGM|1|AA|G|180
5NGM|1|AA|G|181
5NGM|1|AA|C|182
5NGM|1|AA|A|183
5NGM|1|AA|C|184
5NGM|1|AA|A|185
5NGM|1|AA|C|186
*
5NGM|1|AA|G|217
5NGM|1|AA|G|218
5NGM|1|AA|A|219
5NGM|1|AA|A|220
5NGM|1|AA|G|221
5NGM|1|AA|A|222
5NGM|1|AA|G|223
5NGM|1|AA|A|224
5NGM|1|AA|A|225
5NGM|1|AA|A|226
5NGM|1|AA|G|227
*
5NGM|1|AA|C|234
5NGM|1|AA|G|235
5NGM|1|AA|A|236
5NGM|1|AA|U|237
5NGM|1|AA|U|238
*
5NGM|1|AA|A|265
5NGM|1|AA|A|266
5NGM|1|AA|G|267
5NGM|1|AA|A|268
5NGM|1|AA|G|269
*
5NGM|1|AA|C|472
5NGM|1|AA|U|473
5NGM|1|AA|A|474
5NGM|1|AA|A|475
5NGM|1|AA|A|476
5NGM|1|AA|U|477
5NGM|1|AA|A|478
5NGM|1|AA|C|479

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34