J6_5NGM_002

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA

Length

43 nucleotides

Bulged bases

5NGM|1|AA|U|2103, 5NGM|1|AA|U|2417, 5NGM|1|AA|G|2455, 5NGM|1|AA|A|2457, 5NGM|1|AA|U|2458, 5NGM|1|AA|A|2459, 5NGM|1|AA|A|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|U|2101
5NGM|1|AA|U|2102
5NGM|1|AA|U|2103
5NGM|1|AA|A|2104
*
5NGM|1|AA|U|2270
5NGM|1|AA|U|2271
5NGM|1|AA|U|2272
5NGM|1|AA|G|2273
*
5NGM|1|AA|C|2285
5NGM|1|AA|G|2286
*
5NGM|1|AA|C|2308
5NGM|1|AA|G|2309
5NGM|1|AA|C|2310
5NGM|1|AA|U|2311
5NGM|1|AA|C|2312
*
5NGM|1|AA|G|2410
5NGM|1|AA|A|2411
5NGM|1|AA|C|2412
5NGM|1|AA|U|2413
5NGM|1|AA|U|2414
5NGM|1|AA|A|2415
5NGM|1|AA|G|2416
5NGM|1|AA|U|2417
5NGM|1|AA|G|2418
5NGM|1|AA|A|2419
5NGM|1|AA|U|2420
5NGM|1|AA|C|2421
5NGM|1|AA|C|2422
*
5NGM|1|AA|G|2448
5NGM|1|AA|C|2449
5NGM|1|AA|U|2450
5NGM|1|AA|C|2451
5NGM|1|AA|A|2452
5NGM|1|AA|A|2453
5NGM|1|AA|C|2454
5NGM|1|AA|G|2455
5NGM|1|AA|G|2456
5NGM|1|AA|A|2457
5NGM|1|AA|U|2458
5NGM|1|AA|A|2459
5NGM|1|AA|A|2460
5NGM|1|AA|A|2461
5NGM|1|AA|A|2462

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35

Chain AC

50S ribosomal protein L2

Chain AJ

50S ribosomal protein L15

Chain AU

50S ribosomal protein L27

Chain AV

50S ribosomal protein L28