J6_5NJT_001
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GCAGAC*GAAGAGAAAG*CGAUU*AUCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 5NJT|1|U|G|184, 5NJT|1|U|A|226, 5NJT|1|U|U|478
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NJT|1|U|G|45
5NJT|1|U|C|46
*
5NJT|1|U|G|181
5NJT|1|U|C|182
5NJT|1|U|A|183
5NJT|1|U|G|184
5NJT|1|U|A|185
5NJT|1|U|C|186
*
5NJT|1|U|G|218
5NJT|1|U|A|219
5NJT|1|U|A|220
5NJT|1|U|G|221
5NJT|1|U|A|222
5NJT|1|U|G|223
5NJT|1|U|A|224
5NJT|1|U|A|225
5NJT|1|U|A|226
5NJT|1|U|G|227
*
5NJT|1|U|C|234
5NJT|1|U|G|235
5NJT|1|U|A|236
5NJT|1|U|U|237
5NJT|1|U|U|238
*
5NJT|1|U|A|265
5NJT|1|U|U|266
5NJT|1|U|C|267
5NJT|1|U|A|268
5NJT|1|U|G|269
*
5NJT|1|U|C|473
5NJT|1|U|U|474
5NJT|1|U|A|475
5NJT|1|U|A|476
5NJT|1|U|A|477
5NJT|1|U|U|478
5NJT|1|U|A|479
5NJT|1|U|C|480
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L34
Coloring options: