J6_5NP6_001

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

5NP6|1|Y|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|Y|G|45
5NP6|1|Y|G|46
*
5NP6|1|Y|C|179
5NP6|1|Y|G|180
5NP6|1|Y|A|181
5NP6|1|Y|A|182
5NP6|1|Y|C|183
*
5NP6|1|Y|G|214
5NP6|1|Y|G|215
5NP6|1|Y|A|216
5NP6|1|Y|A|217
5NP6|1|Y|A|218
5NP6|1|Y|A|219
5NP6|1|Y|G|220
5NP6|1|Y|A|221
5NP6|1|Y|A|222
5NP6|1|Y|A|223
5NP6|1|Y|U|224
5NP6|1|Y|C|225
*
5NP6|1|Y|G|230
5NP6|1|Y|A|231
5NP6|1|Y|G|232
5NP6|1|Y|A|233
5NP6|1|Y|U|234
5NP6|1|Y|U|235
*
5NP6|1|Y|A|262
5NP6|1|Y|G|263
5NP6|1|Y|C|264
5NP6|1|Y|A|265
5NP6|1|Y|G|266
*
5NP6|1|Y|C|426
5NP6|1|Y|U|427
5NP6|1|Y|A|428
5NP6|1|Y|A|429
5NP6|1|Y|A|430
5NP6|1|Y|U|431
5NP6|1|Y|A|432
5NP6|1|Y|C|433

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34