Loop J6_5NRG

3D structure

PDB id: 5NRG (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å

Loop

Sequence: UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 43 nucleotides
Bulged bases: 5NRG|1|X|U|2103, 5NRG|1|X|A|2415, 5NRG|1|X|U|2417, 5NRG|1|X|G|2455, 5NRG|1|X|A|2457, 5NRG|1|X|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NRG|1|X|U|2101
5NRG|1|X|U|2102
5NRG|1|X|U|2103
5NRG|1|X|A|2104
*
5NRG|1|X|U|2270
5NRG|1|X|U|2271
5NRG|1|X|U|2272
5NRG|1|X|G|2273
*
5NRG|1|X|C|2285
5NRG|1|X|G|2286
*
5NRG|1|X|C|2308
5NRG|1|X|G|2309
5NRG|1|X|C|2310
5NRG|1|X|U|2311
5NRG|1|X|C|2312
*
5NRG|1|X|G|2410
5NRG|1|X|A|2411
5NRG|1|X|C|2412
5NRG|1|X|U|2413
5NRG|1|X|U|2414
5NRG|1|X|A|2415
5NRG|1|X|G|2416
5NRG|1|X|U|2417
5NRG|1|X|G|2418
5NRG|1|X|A|2419
5NRG|1|X|U|2420
5NRG|1|X|C|2421
5NRG|1|X|C|2422
*
5NRG|1|X|G|2448
5NRG|1|X|C|2449
5NRG|1|X|U|2450
5NRG|1|X|C|2451
5NRG|1|X|A|2452
5NRG|1|X|A|2453
5NRG|1|X|C|2454
5NRG|1|X|G|2455
5NRG|1|X|G|2456
5NRG|1|X|A|2457
5NRG|1|X|U|2458
5NRG|1|X|A|2459
5NRG|1|X|A|2460
5NRG|1|X|A|2461
5NRG|1|X|A|2462

Current chains

Chain X: 23S ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27

J6_5NRG_002