J6_5T2A_001

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAAAUCUUG*CAAAAUU*AUGAACCAACCG*CAG*CGAAAG*CGUCU

Length

42 nucleotides

Bulged bases

5T2A|1|2|C|128, 5T2A|1|2|A|144, 5T2A|1|2|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2A|1|2|A|123
5T2A|1|2|A|124
5T2A|1|2|A|125
5T2A|1|2|A|126
5T2A|1|2|U|127
5T2A|1|2|C|128
5T2A|1|2|U|129
5T2A|1|2|U|130
5T2A|1|2|G|131
*
5T2A|1|2|C|141
5T2A|1|2|A|142
5T2A|1|2|A|143
5T2A|1|2|A|144
5T2A|1|2|A|145
5T2A|1|2|U|146
5T2A|1|2|U|147
*
5T2A|1|2|A|178
5T2A|1|2|U|179
5T2A|1|2|G|180
5T2A|1|2|A|181
5T2A|1|2|A|182
5T2A|1|2|C|183
5T2A|1|2|C|184
5T2A|1|2|A|185
5T2A|1|2|A|186
5T2A|1|2|C|187
5T2A|1|2|C|188
5T2A|1|2|G|189
*
5T2A|1|2|C|236
5T2A|1|2|A|237
5T2A|1|2|G|238
*
5T2A|1|2|C|312
5T2A|1|2|G|313
5T2A|1|2|A|314
5T2A|1|2|A|315
5T2A|1|2|A|316
5T2A|1|2|G|317
*
5T2A|1|2|C|332
5T2A|1|2|G|333
5T2A|1|2|U|334
5T2A|1|2|C|335
5T2A|1|2|U|336

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

eS4

Chain 3

eS6