J6_5T2A_002
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAA*UGAUU*AACGAA*UUAAAUACAGA*UC
- Length
- 41 nucleotides
- Bulged bases
- 5T2A|1|A|A|65, 5T2A|1|A|G|108, 5T2A|1|A|A|367, 5T2A|1|A|G|368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|G|20
5T2A|1|A|A|21
5T2A|1|A|C|22
5T2A|1|A|U|23
5T2A|1|A|A|24
5T2A|1|A|C|25
*
5T2A|1|A|G|56
5T2A|1|A|G|57
5T2A|1|A|A|58
5T2A|1|A|A|59
5T2A|1|A|A|60
5T2A|1|A|A|61
5T2A|1|A|G|62
5T2A|1|A|A|63
5T2A|1|A|A|64
5T2A|1|A|A|65
5T2A|1|A|A|66
*
5T2A|1|A|U|73
5T2A|1|A|G|74
5T2A|1|A|A|75
5T2A|1|A|U|76
5T2A|1|A|U|77
*
5T2A|1|A|A|105
5T2A|1|A|A|106
5T2A|1|A|C|107
5T2A|1|A|G|108
5T2A|1|A|A|109
5T2A|1|A|A|110
*
5T2A|1|A|U|359
5T2A|1|A|U|360
5T2A|1|A|A|361
5T2A|1|A|A|362
5T2A|1|A|A|363
5T2A|1|A|U|364
5T2A|1|A|A|365
5T2A|1|A|C|366
5T2A|1|A|A|367
5T2A|1|A|G|368
5T2A|1|A|A|369
*
5T2A|1|C|U|125
5T2A|1|C|C|126
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain L
- eL13
- Chain O
- eL15
- Chain i
- uL29
- Chain l
- eL37
- Chain p
- uL4
Coloring options: