J6_5T2A_003
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGUAC*GGAG*CUGUG*CG*UGGAG
- Length
- 25 nucleotides
- Bulged bases
- 5T2A|1|A|U|771, 5T2A|1|A|G|835, 5T2A|1|A|G|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2A|1|A|C|707
5T2A|1|A|A|708
5T2A|1|A|A|709
5T2A|1|A|G|710
*
5T2A|1|A|C|740
5T2A|1|A|G|741
5T2A|1|A|U|742
5T2A|1|A|A|743
5T2A|1|A|C|744
*
5T2A|1|A|G|751
5T2A|1|A|G|752
5T2A|1|A|A|753
5T2A|1|A|G|754
*
5T2A|1|A|C|768
5T2A|1|A|U|769
5T2A|1|A|G|770
5T2A|1|A|U|771
5T2A|1|A|G|772
*
5T2A|1|A|C|810
5T2A|1|A|G|811
*
5T2A|1|A|U|834
5T2A|1|A|G|835
5T2A|1|A|G|836
5T2A|1|A|A|837
5T2A|1|A|G|838
Current chains
- Chain A
- LSU-alpha
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- eL18
- Chain L
- eL13
- Chain Z
- uL15
- Chain b
- eL29
- Chain k
- eL36
- Chain p
- uL4
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