J6_5TCU_001

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCC*GGCACAC*GGAAGAGAAAGA*UCGAUU*AAGAG*CUAAAUAC

Length

41 nucleotides

Bulged bases

5TCU|1|B|C|46, 5TCU|1|B|C|184, 5TCU|1|B|A|226, 5TCU|1|B|U|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|G|45
5TCU|1|B|C|46
5TCU|1|B|C|47
*
5TCU|1|B|G|180
5TCU|1|B|G|181
5TCU|1|B|C|182
5TCU|1|B|A|183
5TCU|1|B|C|184
5TCU|1|B|A|185
5TCU|1|B|C|186
*
5TCU|1|B|G|217
5TCU|1|B|G|218
5TCU|1|B|A|219
5TCU|1|B|A|220
5TCU|1|B|G|221
5TCU|1|B|A|222
5TCU|1|B|G|223
5TCU|1|B|A|224
5TCU|1|B|A|225
5TCU|1|B|A|226
5TCU|1|B|G|227
5TCU|1|B|A|228
*
5TCU|1|B|U|233
5TCU|1|B|C|234
5TCU|1|B|G|235
5TCU|1|B|A|236
5TCU|1|B|U|237
5TCU|1|B|U|238
*
5TCU|1|B|A|265
5TCU|1|B|A|266
5TCU|1|B|G|267
5TCU|1|B|A|268
5TCU|1|B|G|269
*
5TCU|1|B|C|472
5TCU|1|B|U|473
5TCU|1|B|A|474
5TCU|1|B|A|475
5TCU|1|B|A|476
5TCU|1|B|U|477
5TCU|1|B|A|478
5TCU|1|B|C|479

Current chains

Chain B

23S RRNA

Nearby chains

Chain LG

50S ribosomal protein L34