J6_5U4I_001

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5U4I|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U4I|1|A|G|45
5U4I|1|A|G|46
*
5U4I|1|A|C|179
5U4I|1|A|G|180
5U4I|1|A|A|181
5U4I|1|A|A|182
5U4I|1|A|C|183
*
5U4I|1|A|G|214
5U4I|1|A|G|215
5U4I|1|A|A|216
5U4I|1|A|A|217
5U4I|1|A|A|218
5U4I|1|A|A|219
5U4I|1|A|G|220
5U4I|1|A|A|221
5U4I|1|A|A|222
5U4I|1|A|A|223
5U4I|1|A|U|224
*
5U4I|1|A|A|231
5U4I|1|A|G|232
5U4I|1|A|A|233
5U4I|1|A|U|234
5U4I|1|A|U|235
*
5U4I|1|A|A|262
5U4I|1|A|G|263
5U4I|1|A|C|264
5U4I|1|A|A|265
5U4I|1|A|G|266
*
5U4I|1|A|C|426
5U4I|1|A|U|427
5U4I|1|A|A|428
5U4I|1|A|A|429
5U4I|1|A|A|430
5U4I|1|A|U|431
5U4I|1|A|A|432
5U4I|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34