J6_5UQ8_001

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5UQ8|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ8|1|A|G|44
5UQ8|1|A|C|45
*
5UQ8|1|A|G|179
5UQ8|1|A|G|180
5UQ8|1|A|A|181
5UQ8|1|A|A|182
5UQ8|1|A|C|183
*
5UQ8|1|A|G|214
5UQ8|1|A|G|215
5UQ8|1|A|A|216
5UQ8|1|A|G|217
5UQ8|1|A|A|218
5UQ8|1|A|G|219
5UQ8|1|A|G|220
5UQ8|1|A|A|221
5UQ8|1|A|A|222
5UQ8|1|A|A|223
5UQ8|1|A|G|224
*
5UQ8|1|A|C|231
5UQ8|1|A|G|232
5UQ8|1|A|A|233
5UQ8|1|A|C|234
5UQ8|1|A|U|235
*
5UQ8|1|A|A|262
5UQ8|1|A|C|263
5UQ8|1|A|C|264
5UQ8|1|A|A|265
5UQ8|1|A|G|266
*
5UQ8|1|A|C|426
5UQ8|1|A|U|427
5UQ8|1|A|A|428
5UQ8|1|A|A|429
5UQ8|1|A|G|430
5UQ8|1|A|U|431
5UQ8|1|A|A|432
5UQ8|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34