J6_5VP2_003

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5VP2|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|2A|G|44
5VP2|1|2A|C|45
*
5VP2|1|2A|G|179
5VP2|1|2A|G|180
5VP2|1|2A|A|181
5VP2|1|2A|A|182
5VP2|1|2A|C|183
*
5VP2|1|2A|G|214
5VP2|1|2A|G|215
5VP2|1|2A|A|216
5VP2|1|2A|G|217
5VP2|1|2A|A|218
5VP2|1|2A|G|219
5VP2|1|2A|G|220
5VP2|1|2A|A|221
5VP2|1|2A|A|222
5VP2|1|2A|A|223
5VP2|1|2A|G|224
*
5VP2|1|2A|C|231
5VP2|1|2A|G|232
5VP2|1|2A|A|233
5VP2|1|2A|C|234
5VP2|1|2A|U|235
*
5VP2|1|2A|A|262
5VP2|1|2A|C|263
5VP2|1|2A|C|264
5VP2|1|2A|A|265
5VP2|1|2A|G|266
*
5VP2|1|2A|C|426
5VP2|1|2A|U|427
5VP2|1|2A|A|428
5VP2|1|2A|A|429
5VP2|1|2A|G|430
5VP2|1|2A|U|431
5VP2|1|2A|A|432
5VP2|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34