J6_5VP2_004
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5VP2|1|2A|U|2076, 5VP2|1|2A|A|2388, 5VP2|1|2A|U|2390, 5VP2|1|2A|G|2428, 5VP2|1|2A|A|2430, 5VP2|1|2A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VP2|1|2A|U|2074
5VP2|1|2A|U|2075
5VP2|1|2A|U|2076
5VP2|1|2A|A|2077
*
5VP2|1|2A|U|2243
5VP2|1|2A|U|2244
5VP2|1|2A|U|2245
5VP2|1|2A|G|2246
*
5VP2|1|2A|C|2258
5VP2|1|2A|G|2259
*
5VP2|1|2A|C|2281
5VP2|1|2A|G|2282
5VP2|1|2A|C|2283
5VP2|1|2A|C|2284
*
5VP2|1|2A|G|2384
5VP2|1|2A|C|2385
5VP2|1|2A|C|2386
5VP2|1|2A|U|2387
5VP2|1|2A|A|2388
5VP2|1|2A|G|2389
5VP2|1|2A|U|2390
5VP2|1|2A|G|2391
5VP2|1|2A|A|2392
5VP2|1|2A|A|2393
5VP2|1|2A|C|2394
5VP2|1|2A|C|2395
*
5VP2|1|2A|G|2421
5VP2|1|2A|A|2422
5VP2|1|2A|U|2423
5VP2|1|2A|C|2424
5VP2|1|2A|A|2425
5VP2|1|2A|A|2426
5VP2|1|2A|C|2427
5VP2|1|2A|G|2428
5VP2|1|2A|G|2429
5VP2|1|2A|A|2430
5VP2|1|2A|U|2431
5VP2|1|2A|A|2432
5VP2|1|2A|A|2433
5VP2|1|2A|A|2434
5VP2|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
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