J6_5Z3G_001
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5Z3G|1|A|A|67, 5Z3G|1|A|U|329, 5Z3G|1|B|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5Z3G|1|A|G|22
5Z3G|1|A|A|23
5Z3G|1|A|G|24
5Z3G|1|A|U|25
5Z3G|1|A|A|26
5Z3G|1|A|C|27
*
5Z3G|1|A|G|58
5Z3G|1|A|G|59
5Z3G|1|A|A|60
5Z3G|1|A|A|61
5Z3G|1|A|A|62
5Z3G|1|A|A|63
5Z3G|1|A|G|64
5Z3G|1|A|A|65
5Z3G|1|A|A|66
5Z3G|1|A|A|67
5Z3G|1|A|C|68
*
5Z3G|1|A|G|75
5Z3G|1|A|G|76
5Z3G|1|A|A|77
5Z3G|1|A|U|78
5Z3G|1|A|U|79
*
5Z3G|1|A|A|106
5Z3G|1|A|A|107
5Z3G|1|A|A|108
5Z3G|1|A|A|109
5Z3G|1|A|G|110
*
5Z3G|1|A|C|321
5Z3G|1|A|U|322
5Z3G|1|A|A|323
5Z3G|1|A|A|324
5Z3G|1|A|A|325
5Z3G|1|A|U|326
5Z3G|1|A|A|327
5Z3G|1|A|U|328
5Z3G|1|A|U|329
5Z3G|1|A|G|330
5Z3G|1|A|G|331
*
5Z3G|1|B|C|32
5Z3G|1|B|A|33
5Z3G|1|B|U|34
5Z3G|1|B|C|35
Current chains
- Chain A
- 25S rRNA
- Chain B
- 5.8S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L13-A
- Chain R
- 60S ribosomal protein L15-A
- Chain l
- 60S ribosomal protein L35-A
- Chain n
- 60S ribosomal protein L37-A
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