J6_6AZ1_001
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAAAUCU*AAAUUG*CAUGAACCAACCG*CAG*CGAAAG*CGUCU
- Length
- 40 nucleotides
- Bulged bases
- 6AZ1|1|1|C|128, 6AZ1|1|1|A|144, 6AZ1|1|1|U|146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6AZ1|1|1|A|123
6AZ1|1|1|A|124
6AZ1|1|1|A|125
6AZ1|1|1|A|126
6AZ1|1|1|U|127
6AZ1|1|1|C|128
6AZ1|1|1|U|129
*
6AZ1|1|1|A|143
6AZ1|1|1|A|144
6AZ1|1|1|A|145
6AZ1|1|1|U|146
6AZ1|1|1|U|147
6AZ1|1|1|G|148
*
6AZ1|1|1|C|177
6AZ1|1|1|A|178
6AZ1|1|1|U|179
6AZ1|1|1|G|180
6AZ1|1|1|A|181
6AZ1|1|1|A|182
6AZ1|1|1|C|183
6AZ1|1|1|C|184
6AZ1|1|1|A|185
6AZ1|1|1|A|186
6AZ1|1|1|C|187
6AZ1|1|1|C|188
6AZ1|1|1|G|189
*
6AZ1|1|1|C|236
6AZ1|1|1|A|237
6AZ1|1|1|G|238
*
6AZ1|1|1|C|312
6AZ1|1|1|G|313
6AZ1|1|1|A|314
6AZ1|1|1|A|315
6AZ1|1|1|A|316
6AZ1|1|1|G|317
*
6AZ1|1|1|C|332
6AZ1|1|1|G|333
6AZ1|1|1|U|334
6AZ1|1|1|C|335
6AZ1|1|1|U|336
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain E
- ribosomal protein S4e
- Chain G
- ribosomal protein S6e
Coloring options: