J6_6B4V_002
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 6B4V|1|B|U|2076, 6B4V|1|B|A|2388, 6B4V|1|B|U|2390, 6B4V|1|B|G|2428, 6B4V|1|B|A|2430, 6B4V|1|B|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6B4V|1|B|U|2074
6B4V|1|B|U|2075
6B4V|1|B|U|2076
6B4V|1|B|A|2077
*
6B4V|1|B|U|2243
6B4V|1|B|U|2244
6B4V|1|B|U|2245
6B4V|1|B|G|2246
*
6B4V|1|B|C|2258
6B4V|1|B|G|2259
*
6B4V|1|B|C|2281
6B4V|1|B|G|2282
6B4V|1|B|C|2283
6B4V|1|B|C|2284
*
6B4V|1|B|G|2384
6B4V|1|B|C|2385
6B4V|1|B|C|2386
6B4V|1|B|U|2387
6B4V|1|B|A|2388
6B4V|1|B|G|2389
6B4V|1|B|U|2390
6B4V|1|B|G|2391
6B4V|1|B|A|2392
6B4V|1|B|A|2393
6B4V|1|B|C|2394
6B4V|1|B|C|2395
*
6B4V|1|B|G|2421
6B4V|1|B|A|2422
6B4V|1|B|U|2423
6B4V|1|B|C|2424
6B4V|1|B|A|2425
6B4V|1|B|A|2426
6B4V|1|B|C|2427
6B4V|1|B|G|2428
6B4V|1|B|G|2429
6B4V|1|B|A|2430
6B4V|1|B|U|2431
6B4V|1|B|A|2432
6B4V|1|B|A|2433
6B4V|1|B|A|2434
6B4V|1|B|A|2435
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain DA
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L2
- Chain FA
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
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