J6_6B4V_003

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

6B4V|1|FB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|G|45
6B4V|1|FB|C|46
*
6B4V|1|FB|G|179
6B4V|1|FB|G|180
6B4V|1|FB|A|181
6B4V|1|FB|A|182
6B4V|1|FB|C|183
*
6B4V|1|FB|G|214
6B4V|1|FB|G|215
6B4V|1|FB|A|216
6B4V|1|FB|G|217
6B4V|1|FB|A|218
6B4V|1|FB|G|219
6B4V|1|FB|G|220
6B4V|1|FB|A|221
6B4V|1|FB|A|222
6B4V|1|FB|A|223
6B4V|1|FB|G|224
*
6B4V|1|FB|C|231
6B4V|1|FB|G|232
6B4V|1|FB|A|233
6B4V|1|FB|C|234
6B4V|1|FB|U|235
*
6B4V|1|FB|A|262
6B4V|1|FB|C|263
6B4V|1|FB|C|264
6B4V|1|FB|A|265
6B4V|1|FB|G|266
*
6B4V|1|FB|C|426
6B4V|1|FB|U|427
6B4V|1|FB|A|428
6B4V|1|FB|A|429
6B4V|1|FB|G|430
6B4V|1|FB|U|431
6B4V|1|FB|A|432
6B4V|1|FB|C|433

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L34