J6_6B4V_004

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

6B4V|1|FB|U|2076, 6B4V|1|FB|A|2388, 6B4V|1|FB|U|2390, 6B4V|1|FB|G|2428, 6B4V|1|FB|A|2430, 6B4V|1|FB|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|FB|U|2074
6B4V|1|FB|U|2075
6B4V|1|FB|U|2076
6B4V|1|FB|A|2077
*
6B4V|1|FB|U|2243
6B4V|1|FB|U|2244
6B4V|1|FB|U|2245
6B4V|1|FB|G|2246
*
6B4V|1|FB|C|2258
6B4V|1|FB|G|2259
*
6B4V|1|FB|C|2281
6B4V|1|FB|G|2282
6B4V|1|FB|C|2283
6B4V|1|FB|C|2284
*
6B4V|1|FB|G|2384
6B4V|1|FB|C|2385
6B4V|1|FB|C|2386
6B4V|1|FB|U|2387
6B4V|1|FB|A|2388
6B4V|1|FB|G|2389
6B4V|1|FB|U|2390
6B4V|1|FB|G|2391
6B4V|1|FB|A|2392
6B4V|1|FB|A|2393
6B4V|1|FB|C|2394
6B4V|1|FB|C|2395
*
6B4V|1|FB|G|2421
6B4V|1|FB|A|2422
6B4V|1|FB|U|2423
6B4V|1|FB|C|2424
6B4V|1|FB|A|2425
6B4V|1|FB|A|2426
6B4V|1|FB|C|2427
6B4V|1|FB|G|2428
6B4V|1|FB|G|2429
6B4V|1|FB|A|2430
6B4V|1|FB|U|2431
6B4V|1|FB|A|2432
6B4V|1|FB|A|2433
6B4V|1|FB|A|2434
6B4V|1|FB|A|2435

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L27

Chain CC

50S ribosomal protein L28

Chain HB

Transfer RNA; tRNA

Chain HC

50S ribosomal protein L33

Chain IB

50S ribosomal protein L2

Chain JC

50S ribosomal protein L35

Chain QB

50S ribosomal protein L15