J6_6D90_002

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAUCUUG*CUGCUC*GAAGCGUU*AUGGAAUAGGACCGC*GAGGCCAUGAUUAAGAGG*UCAUUA

Length

62 nucleotides

Bulged bases

6D90|1|2|C|687, 6D90|1|2|U|871, 6D90|1|2|G|873, 6D90|1|2|A|913, 6D90|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|U|682
6D90|1|2|G|683
6D90|1|2|G|684
6D90|1|2|A|685
6D90|1|2|U|686
6D90|1|2|C|687
6D90|1|2|U|688
6D90|1|2|U|689
6D90|1|2|G|690
*
6D90|1|2|C|736
6D90|1|2|U|743
6D90|1|2|G|744
6D90|1|2|C|745
6D90|1|2|U|749
6D90|1|2|C|750
*
6D90|1|2|G|793
6D90|1|2|A|794
6D90|1|2|A|795
6D90|1|2|G|796
6D90|1|2|C|797
6D90|1|2|G|798
6D90|1|2|U|799
6D90|1|2|U|800
*
6D90|1|2|A|865
6D90|1|2|U|866
6D90|1|2|G|867
6D90|1|2|G|868
6D90|1|2|A|869
6D90|1|2|A|870
6D90|1|2|U|871
6D90|1|2|A|872
6D90|1|2|G|873
6D90|1|2|G|874
6D90|1|2|A|875
6D90|1|2|C|876
6D90|1|2|C|877
6D90|1|2|G|878
6D90|1|2|C|879
*
6D90|1|2|G|907
6D90|1|2|A|908
6D90|1|2|G|909
6D90|1|2|G|910
6D90|1|2|C|911
6D90|1|2|C|912
6D90|1|2|A|913
6D90|1|2|U|914
6D90|1|2|G|915
6D90|1|2|A|916
6D90|1|2|U|917
6D90|1|2|U|918
6D90|1|2|A|919
6D90|1|2|A|920
6D90|1|2|G|921
6D90|1|2|A|922
6D90|1|2|G|923
6D90|1|2|G|924
*
6D90|1|2|U|1018
6D90|1|2|C|1019
6D90|1|2|A|1020
6D90|1|2|U|1021
6D90|1|2|U|1022
6D90|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain II

eS7

Chain MM

uS17

Chain OO

uS15

Chain R

eL19

Chain XX

uS8

Chain YY

uS12

Chain cc

eS27