J6_6D90_003
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUC
- Length
- 42 nucleotides
- Bulged bases
- 6D90|1|5|A|66, 6D90|1|5|C|340, 6D90|1|8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|G|21
6D90|1|5|G|22
6D90|1|5|C|23
6D90|1|5|G|24
6D90|1|5|A|25
6D90|1|5|C|26
*
6D90|1|5|G|57
6D90|1|5|G|58
6D90|1|5|A|59
6D90|1|5|A|60
6D90|1|5|A|61
6D90|1|5|A|62
6D90|1|5|G|63
6D90|1|5|A|64
6D90|1|5|A|65
6D90|1|5|A|66
6D90|1|5|C|67
*
6D90|1|5|G|74
6D90|1|5|G|75
6D90|1|5|A|76
6D90|1|5|U|77
6D90|1|5|U|78
*
6D90|1|5|A|105
6D90|1|5|A|106
6D90|1|5|G|107
6D90|1|5|A|108
6D90|1|5|G|109
*
6D90|1|5|C|332
6D90|1|5|U|333
6D90|1|5|A|334
6D90|1|5|A|335
6D90|1|5|A|336
6D90|1|5|U|337
6D90|1|5|A|338
6D90|1|5|C|339
6D90|1|5|C|340
6D90|1|5|G|341
6D90|1|5|G|342
*
6D90|1|8|C|32
6D90|1|8|G|33
6D90|1|8|U|34
6D90|1|8|C|35
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- eL35
- Chain i
- eL36
- Chain j
- eL37
Coloring options: