J6_6D9J_002
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 6D9J|1|5|C|1501
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|C|1352
6D9J|1|5|G|1353
6D9J|1|5|A|1354
6D9J|1|5|G|1355
*
6D9J|1|5|C|1384
6D9J|1|5|G|1385
6D9J|1|5|C|1386
6D9J|1|5|A|1387
6D9J|1|5|A|1388
*
6D9J|1|5|U|1395
6D9J|1|5|G|1396
6D9J|1|5|A|1397
6D9J|1|5|A|1398
6D9J|1|5|G|1399
*
6D9J|1|5|C|1418
6D9J|1|5|G|1419
6D9J|1|5|A|1420
6D9J|1|5|G|1421
*
6D9J|1|5|C|1464
6D9J|1|5|G|1465
6D9J|1|5|G|1466
*
6D9J|1|5|C|1499
6D9J|1|5|A|1500
6D9J|1|5|C|1501
6D9J|1|5|G|1502
6D9J|1|5|A|1503
6D9J|1|5|G|1504
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain Q
- eL18
- Chain a
- uL15
- Chain b
- eL29
- Chain i
- eL36
Coloring options: