J6_6ERI_001

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GACAAC*GGAAAAGAAAG*CGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

6ERI|1|AA|A|45, 6ERI|1|AA|A|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ERI|1|AA|G|44
6ERI|1|AA|A|45
6ERI|1|AA|C|46
*
6ERI|1|AA|G|163
6ERI|1|AA|A|164
6ERI|1|AA|C|165
6ERI|1|AA|A|166
6ERI|1|AA|A|167
6ERI|1|AA|C|168
*
6ERI|1|AA|G|199
6ERI|1|AA|G|200
6ERI|1|AA|A|201
6ERI|1|AA|A|202
6ERI|1|AA|A|203
6ERI|1|AA|A|204
6ERI|1|AA|G|205
6ERI|1|AA|A|206
6ERI|1|AA|A|207
6ERI|1|AA|A|208
6ERI|1|AA|G|209
*
6ERI|1|AA|C|216
6ERI|1|AA|G|217
6ERI|1|AA|A|218
6ERI|1|AA|U|219
6ERI|1|AA|U|220
*
6ERI|1|AA|A|247
6ERI|1|AA|G|248
6ERI|1|AA|C|249
6ERI|1|AA|A|250
6ERI|1|AA|G|251
*
6ERI|1|AA|C|438
6ERI|1|AA|U|439
6ERI|1|AA|A|440
6ERI|1|AA|A|441
6ERI|1|AA|A|442
6ERI|1|AA|U|443
6ERI|1|AA|A|444
6ERI|1|AA|C|445

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Ac

50S ribosomal protein L34, chloroplastic