3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
6FRK|1|5|A|66, 6FRK|1|8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|G|21
6FRK|1|5|G|22
6FRK|1|5|C|23
6FRK|1|5|G|24
6FRK|1|5|A|25
6FRK|1|5|C|26
*
6FRK|1|5|G|57
6FRK|1|5|G|58
6FRK|1|5|A|59
6FRK|1|5|G|60
6FRK|1|5|A|61
6FRK|1|5|A|62
6FRK|1|5|G|63
6FRK|1|5|A|64
6FRK|1|5|A|65
6FRK|1|5|A|66
6FRK|1|5|C|67
*
6FRK|1|5|G|74
6FRK|1|5|G|75
6FRK|1|5|A|76
6FRK|1|5|U|77
6FRK|1|5|U|78
*
6FRK|1|5|A|105
6FRK|1|5|A|106
6FRK|1|5|G|107
6FRK|1|5|A|108
6FRK|1|5|G|109
*
6FRK|1|5|C|332
6FRK|1|5|U|333
6FRK|1|5|A|334
6FRK|1|5|A|335
6FRK|1|5|A|336
6FRK|1|5|U|337
6FRK|1|5|A|338
6FRK|1|5|C|339
*
6FRK|1|8|G|33
6FRK|1|8|U|34
6FRK|1|8|C|35

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain L
Ribosomal protein eL13
Chain N
Ribosomal protein L15
Chain h
Ribosomal protein uL29
Chain i
Ribosomal protein eL36
Chain j
Ribosomal protein L37

Coloring options:

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