3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAG*CGCAAU*GUGAAG*CGAG*CGG*CACGAG
Length
29 nucleotides
Bulged bases
6FRK|1|5|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|C|1352
6FRK|1|5|G|1353
6FRK|1|5|A|1354
6FRK|1|5|G|1355
*
6FRK|1|5|C|1384
6FRK|1|5|G|1385
6FRK|1|5|C|1386
6FRK|1|5|A|1387
6FRK|1|5|A|1388
6FRK|1|5|U|1389
*
6FRK|1|5|G|1394
6FRK|1|5|U|1395
6FRK|1|5|G|1396
6FRK|1|5|A|1397
6FRK|1|5|A|1398
6FRK|1|5|G|1399
*
6FRK|1|5|C|1418
6FRK|1|5|G|1419
6FRK|1|5|A|1420
6FRK|1|5|G|1421
*
6FRK|1|5|C|1464
6FRK|1|5|G|1465
6FRK|1|5|G|1466
*
6FRK|1|5|C|1499
6FRK|1|5|A|1500
6FRK|1|5|C|1501
6FRK|1|5|G|1502
6FRK|1|5|A|1503
6FRK|1|5|G|1504

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uL4
Chain L
Ribosomal protein eL13
Chain Q
Ribosomal protein eL18
Chain a
Ribosomal protein uL15
Chain b
60S ribosomal protein L29
Chain i
Ribosomal protein eL36

Coloring options:

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