J6_6FRK_003

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

6FRK|1|5|G|3922, 6FRK|1|5|C|4337, 6FRK|1|5|A|4376, 6FRK|1|5|A|4378, 6FRK|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FRK|1|5|U|3920
6FRK|1|5|U|3921
6FRK|1|5|G|3922
6FRK|1|5|A|3923
*
6FRK|1|5|U|4188
6FRK|1|5|U|4189
6FRK|1|5|U|4190
6FRK|1|5|G|4191
*
6FRK|1|5|C|4204
6FRK|1|5|A|4205
*
6FRK|1|5|U|4227
6FRK|1|5|G|4228
6FRK|1|5|U|4229
6FRK|1|5|C|4230
*
6FRK|1|5|G|4331
6FRK|1|5|C|4332
6FRK|1|5|C|4333
6FRK|1|5|U|4334
6FRK|1|5|C|4335
6FRK|1|5|A|4336
6FRK|1|5|C|4337
6FRK|1|5|G|4338
6FRK|1|5|A|4339
6FRK|1|5|U|4340
6FRK|1|5|C|4341
6FRK|1|5|C|4342
*
6FRK|1|5|G|4370
6FRK|1|5|G|4371
6FRK|1|5|U|4372
6FRK|1|5|G|4373
6FRK|1|5|U|4374
6FRK|1|5|C|4375
6FRK|1|5|A|4376
6FRK|1|5|G|4377
6FRK|1|5|A|4378
6FRK|1|5|A|4379
6FRK|1|5|A|4380
6FRK|1|5|A|4381

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain Q

Ribosomal protein eL18

Chain T

Ribosomal protein eL21

Chain a

Ribosomal protein uL15

Chain o

Ribosomal protein eL42