J6_6FXC_001

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCC*GGCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

6FXC|1|AA|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|AA|G|45
6FXC|1|AA|C|46
6FXC|1|AA|C|47
*
6FXC|1|AA|G|180
6FXC|1|AA|G|181
6FXC|1|AA|C|182
6FXC|1|AA|A|183
6FXC|1|AA|C|184
6FXC|1|AA|A|185
6FXC|1|AA|C|186
*
6FXC|1|AA|G|217
6FXC|1|AA|G|218
6FXC|1|AA|A|219
6FXC|1|AA|A|220
6FXC|1|AA|G|221
6FXC|1|AA|A|222
6FXC|1|AA|G|223
6FXC|1|AA|A|224
6FXC|1|AA|A|225
6FXC|1|AA|A|226
6FXC|1|AA|G|227
*
6FXC|1|AA|C|234
6FXC|1|AA|G|235
6FXC|1|AA|A|236
6FXC|1|AA|U|237
6FXC|1|AA|U|238
*
6FXC|1|AA|A|265
6FXC|1|AA|A|266
6FXC|1|AA|G|267
6FXC|1|AA|A|268
6FXC|1|AA|G|269
*
6FXC|1|AA|C|472
6FXC|1|AA|U|473
6FXC|1|AA|A|474
6FXC|1|AA|A|475
6FXC|1|AA|A|476
6FXC|1|AA|U|477
6FXC|1|AA|A|478
6FXC|1|AA|C|479

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34