J6_6FXC_004

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA

Length

43 nucleotides

Bulged bases

6FXC|1|BA|U|2103, 6FXC|1|BA|U|2417, 6FXC|1|BA|G|2455, 6FXC|1|BA|A|2457, 6FXC|1|BA|U|2458, 6FXC|1|BA|A|2459, 6FXC|1|BA|A|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|BA|U|2101
6FXC|1|BA|U|2102
6FXC|1|BA|U|2103
6FXC|1|BA|A|2104
*
6FXC|1|BA|U|2270
6FXC|1|BA|U|2271
6FXC|1|BA|U|2272
6FXC|1|BA|G|2273
*
6FXC|1|BA|C|2285
6FXC|1|BA|G|2286
*
6FXC|1|BA|C|2308
6FXC|1|BA|G|2309
6FXC|1|BA|C|2310
6FXC|1|BA|U|2311
6FXC|1|BA|C|2312
*
6FXC|1|BA|G|2410
6FXC|1|BA|A|2411
6FXC|1|BA|C|2412
6FXC|1|BA|U|2413
6FXC|1|BA|U|2414
6FXC|1|BA|A|2415
6FXC|1|BA|G|2416
6FXC|1|BA|U|2417
6FXC|1|BA|G|2418
6FXC|1|BA|A|2419
6FXC|1|BA|U|2420
6FXC|1|BA|C|2421
6FXC|1|BA|C|2422
*
6FXC|1|BA|G|2448
6FXC|1|BA|C|2449
6FXC|1|BA|U|2450
6FXC|1|BA|C|2451
6FXC|1|BA|A|2452
6FXC|1|BA|A|2453
6FXC|1|BA|C|2454
6FXC|1|BA|G|2455
6FXC|1|BA|G|2456
6FXC|1|BA|A|2457
6FXC|1|BA|U|2458
6FXC|1|BA|A|2459
6FXC|1|BA|A|2460
6FXC|1|BA|A|2461
6FXC|1|BA|A|2462

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BC

50S ribosomal protein L2

Chain BJ

50S ribosomal protein L15

Chain BU

50S ribosomal protein L27

Chain BV

50S ribosomal protein L28