J6_6GC0_001

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

6GC0|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC0|1|A|G|45
6GC0|1|A|G|46
*
6GC0|1|A|C|179
6GC0|1|A|G|180
6GC0|1|A|A|181
6GC0|1|A|A|182
6GC0|1|A|C|183
*
6GC0|1|A|G|214
6GC0|1|A|G|215
6GC0|1|A|A|216
6GC0|1|A|A|217
6GC0|1|A|A|218
6GC0|1|A|A|219
6GC0|1|A|G|220
6GC0|1|A|A|221
6GC0|1|A|A|222
6GC0|1|A|A|223
6GC0|1|A|U|224
6GC0|1|A|C|225
*
6GC0|1|A|G|230
6GC0|1|A|A|231
6GC0|1|A|G|232
6GC0|1|A|A|233
6GC0|1|A|U|234
6GC0|1|A|U|235
*
6GC0|1|A|A|262
6GC0|1|A|G|263
6GC0|1|A|C|264
6GC0|1|A|A|265
6GC0|1|A|G|266
*
6GC0|1|A|C|426
6GC0|1|A|U|427
6GC0|1|A|A|428
6GC0|1|A|A|429
6GC0|1|A|A|430
6GC0|1|A|U|431
6GC0|1|A|A|432
6GC0|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34