J6_6GQB_001
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUUG*CAAAAG*CUAAAUAUUGG*CAUC
- Length
- 44 nucleotides
- Bulged bases
- 6GQB|1|1|A|67, 6GQB|1|1|U|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|G|22
6GQB|1|1|A|23
6GQB|1|1|G|24
6GQB|1|1|U|25
6GQB|1|1|A|26
6GQB|1|1|C|27
*
6GQB|1|1|G|58
6GQB|1|1|G|59
6GQB|1|1|A|60
6GQB|1|1|A|61
6GQB|1|1|A|62
6GQB|1|1|A|63
6GQB|1|1|G|64
6GQB|1|1|A|65
6GQB|1|1|A|66
6GQB|1|1|A|67
6GQB|1|1|C|68
*
6GQB|1|1|G|75
6GQB|1|1|G|76
6GQB|1|1|A|77
6GQB|1|1|U|78
6GQB|1|1|U|79
6GQB|1|1|G|80
*
6GQB|1|1|C|105
6GQB|1|1|A|106
6GQB|1|1|A|107
6GQB|1|1|A|108
6GQB|1|1|A|109
6GQB|1|1|G|110
*
6GQB|1|1|C|321
6GQB|1|1|U|322
6GQB|1|1|A|323
6GQB|1|1|A|324
6GQB|1|1|A|325
6GQB|1|1|U|326
6GQB|1|1|A|327
6GQB|1|1|U|328
6GQB|1|1|U|329
6GQB|1|1|G|330
6GQB|1|1|G|331
*
6GQB|1|4|C|32
6GQB|1|4|A|33
6GQB|1|4|U|34
6GQB|1|4|C|35
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: