J6_6GXM_001

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC

Length

38 nucleotides

Bulged bases

6GXM|1|A|A|223, 6GXM|1|A|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXM|1|A|G|45
6GXM|1|A|G|46
*
6GXM|1|A|C|179
6GXM|1|A|G|180
6GXM|1|A|A|181
6GXM|1|A|A|182
6GXM|1|A|C|183
*
6GXM|1|A|G|214
6GXM|1|A|G|215
6GXM|1|A|A|216
6GXM|1|A|A|217
6GXM|1|A|A|218
6GXM|1|A|A|219
6GXM|1|A|G|220
6GXM|1|A|A|221
6GXM|1|A|A|222
6GXM|1|A|A|223
6GXM|1|A|U|224
6GXM|1|A|C|225
*
6GXM|1|A|G|230
6GXM|1|A|A|231
6GXM|1|A|G|232
6GXM|1|A|A|233
6GXM|1|A|U|234
6GXM|1|A|U|235
*
6GXM|1|A|A|262
6GXM|1|A|G|263
6GXM|1|A|C|264
6GXM|1|A|A|265
6GXM|1|A|G|266
*
6GXM|1|A|C|426
6GXM|1|A|U|427
6GXM|1|A|A|428
6GXM|1|A|A|429
6GXM|1|A|A|430
6GXM|1|A|U|431
6GXM|1|A|A|432
6GXM|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34