Loop J6_6GXM

3D structure

PDB id: 6GXM (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 6GXM|1|A|U|2076, 6GXM|1|A|A|2388, 6GXM|1|A|U|2390, 6GXM|1|A|G|2428, 6GXM|1|A|A|2430, 6GXM|1|A|U|2431, 6GXM|1|A|A|2434
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GXM|1|A|U|2074
6GXM|1|A|U|2075
6GXM|1|A|U|2076
6GXM|1|A|A|2077
*
6GXM|1|A|U|2243
6GXM|1|A|U|2244
6GXM|1|A|U|2245
6GXM|1|A|G|2246
*
6GXM|1|A|C|2258
6GXM|1|A|U|2259
*
6GXM|1|A|A|2281
6GXM|1|A|G|2282
6GXM|1|A|C|2283
6GXM|1|A|A|2284
*
6GXM|1|A|U|2384
6GXM|1|A|C|2385
6GXM|1|A|A|2386
6GXM|1|A|U|2387
6GXM|1|A|A|2388
6GXM|1|A|G|2389
6GXM|1|A|U|2390
6GXM|1|A|G|2391
6GXM|1|A|A|2392
6GXM|1|A|U|2393
6GXM|1|A|C|2394
6GXM|1|A|C|2395
*
6GXM|1|A|G|2421
6GXM|1|A|C|2422
6GXM|1|A|U|2423
6GXM|1|A|C|2424
6GXM|1|A|A|2425
6GXM|1|A|A|2426
6GXM|1|A|C|2427
6GXM|1|A|G|2428
6GXM|1|A|G|2429
6GXM|1|A|A|2430
6GXM|1|A|U|2431
6GXM|1|A|A|2432
6GXM|1|A|A|2433
6GXM|1|A|A|2434
6GXM|1|A|A|2435

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain 1: 50S ribosomal protein L33
Chain 3: 50S ribosomal protein L35
Chain C: 50S ribosomal protein L2
Chain L: 50S ribosomal protein L15
Chain W: 50S ribosomal protein L27
Chain X: 50S ribosomal protein L28

J6_6GXM_002