3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GG*CGAAC*GGAAAAGAAAUC*GAGAUU*AGCAG*CUAAAUAC
Length
38 nucleotides
Bulged bases
6GXN|1|A|A|223, 6GXN|1|A|C|264
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GXN|1|A|G|45
6GXN|1|A|G|46
*
6GXN|1|A|C|179
6GXN|1|A|G|180
6GXN|1|A|A|181
6GXN|1|A|A|182
6GXN|1|A|C|183
*
6GXN|1|A|G|214
6GXN|1|A|G|215
6GXN|1|A|A|216
6GXN|1|A|A|217
6GXN|1|A|A|218
6GXN|1|A|A|219
6GXN|1|A|G|220
6GXN|1|A|A|221
6GXN|1|A|A|222
6GXN|1|A|A|223
6GXN|1|A|U|224
6GXN|1|A|C|225
*
6GXN|1|A|G|230
6GXN|1|A|A|231
6GXN|1|A|G|232
6GXN|1|A|A|233
6GXN|1|A|U|234
6GXN|1|A|U|235
*
6GXN|1|A|A|262
6GXN|1|A|G|263
6GXN|1|A|C|264
6GXN|1|A|A|265
6GXN|1|A|G|266
*
6GXN|1|A|C|426
6GXN|1|A|U|427
6GXN|1|A|A|428
6GXN|1|A|A|429
6GXN|1|A|A|430
6GXN|1|A|U|431
6GXN|1|A|A|432
6GXN|1|A|C|433

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.3364 s
Application loaded.