Loop J6_6GZX

3D structure

PDB id: 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
Description: T. thermophilus hibernating 100S ribosome (ice)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.57 Å

Loop

Sequence: CCCGAGCC*GGGAACC*GAGGAGAGGAAAGA*UCGACUC*GACCAG*CUAAGUACUCCGGG
Length: 56 nucleotides
Bulged bases: 6GZX|1|A2|A|213
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GZX|1|A2|C|39
6GZX|1|A2|C|40
6GZX|1|A2|C|41
6GZX|1|A2|G|42
6GZX|1|A2|A|43
6GZX|1|A2|G|44
6GZX|1|A2|C|45
6GZX|1|A2|C|46
*
6GZX|1|A2|G|168
6GZX|1|A2|G|169
6GZX|1|A2|G|170
6GZX|1|A2|A|171
6GZX|1|A2|A|172
6GZX|1|A2|C|173
6GZX|1|A2|C|174
*
6GZX|1|A2|G|202
6GZX|1|A2|A|203
6GZX|1|A2|G|204
6GZX|1|A2|G|205
6GZX|1|A2|A|206
6GZX|1|A2|G|207
6GZX|1|A2|A|208
6GZX|1|A2|G|209
6GZX|1|A2|G|210
6GZX|1|A2|A|211
6GZX|1|A2|A|212
6GZX|1|A2|A|213
6GZX|1|A2|G|214
6GZX|1|A2|A|215
*
6GZX|1|A2|U|220
6GZX|1|A2|C|221
6GZX|1|A2|G|222
6GZX|1|A2|A|223
6GZX|1|A2|C|224
6GZX|1|A2|U|225
6GZX|1|A2|C|226
*
6GZX|1|A2|G|251
6GZX|1|A2|A|252
6GZX|1|A2|C|253
6GZX|1|A2|C|254
6GZX|1|A2|A|255
6GZX|1|A2|G|256
*
6GZX|1|A2|C|455
6GZX|1|A2|U|456
6GZX|1|A2|A|457
6GZX|1|A2|A|458
6GZX|1|A2|G|459
6GZX|1|A2|U|460
6GZX|1|A2|A|461
6GZX|1|A2|C|462
6GZX|1|A2|U|463
6GZX|1|A2|C|464
6GZX|1|A2|C|465
6GZX|1|A2|G|466
6GZX|1|A2|G|467
6GZX|1|A2|G|468

Current chains

Chain A2: 23S ribosomal RNA

Nearby chains

Chain E2: 50S ribosomal protein L4
Chain c2: 50S ribosomal protein L34

J6_6GZX_005