J6_6GZX_006
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CGAAAU*AGCCUCA*UGGGAGUGAG*CGAGCGCGG*CCGAGACC*GGGUCUGGGGGAUGACCCCAGGCGGUAG
- Length
- 68 nucleotides
- Bulged bases
- 6GZX|1|A2|C|886, 6GZX|1|A2|U|990, 6GZX|1|A2|G|991, 6GZX|1|A2|A|992, 6GZX|1|A2|C|1022, 6GZX|1|A2|G|1220, 6GZX|1|A2|A|1221, 6GZX|1|A2|A|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A2|C|866
6GZX|1|A2|G|867
6GZX|1|A2|A|868
6GZX|1|A2|A|869
6GZX|1|A2|A|870
6GZX|1|A2|U|871
*
6GZX|1|A2|A|884
6GZX|1|A2|G|885
6GZX|1|A2|C|886
6GZX|1|A2|C|887
6GZX|1|A2|U|888
6GZX|1|A2|C|889
6GZX|1|A2|A|890
*
6GZX|1|A2|U|984
6GZX|1|A2|G|985
6GZX|1|A2|G|986
6GZX|1|A2|G|987
6GZX|1|A2|A|988
6GZX|1|A2|G|989
6GZX|1|A2|U|990
6GZX|1|A2|G|991
6GZX|1|A2|A|992
6GZX|1|A2|G|993
*
6GZX|1|A2|C|1018
6GZX|1|A2|G|1019
6GZX|1|A2|A|1020
6GZX|1|A2|G|1021
6GZX|1|A2|C|1022
6GZX|1|A2|G|1023
6GZX|1|A2|C|1024
6GZX|1|A2|G|1025
6GZX|1|A2|G|1026
*
6GZX|1|A2|C|1033
6GZX|1|A2|C|1034
6GZX|1|A2|G|1035
6GZX|1|A2|A|1036
6GZX|1|A2|G|1037
6GZX|1|A2|A|1038
6GZX|1|A2|C|1039
6GZX|1|A2|C|1040
*
6GZX|1|A2|G|1210
6GZX|1|A2|G|1211
6GZX|1|A2|G|1212
6GZX|1|A2|U|1213
6GZX|1|A2|C|1214
6GZX|1|A2|U|1215
6GZX|1|A2|G|1216
6GZX|1|A2|G|1217
6GZX|1|A2|G|1218
6GZX|1|A2|G|1219
6GZX|1|A2|G|1220
6GZX|1|A2|A|1221
6GZX|1|A2|U|1222
6GZX|1|A2|G|1223
6GZX|1|A2|A|1224
6GZX|1|A2|C|1225
6GZX|1|A2|C|1226
6GZX|1|A2|C|1227
6GZX|1|A2|C|1228
6GZX|1|A2|A|1229
6GZX|1|A2|G|1230
6GZX|1|A2|G|1231
6GZX|1|A2|C|1232
6GZX|1|A2|G|1233
6GZX|1|A2|G|1234
6GZX|1|A2|U|1235
6GZX|1|A2|A|1236
6GZX|1|A2|G|1237
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain K2
- 50S ribosomal protein L15
- Chain P2
- 50S ribosomal protein L20
- Chain Q2
- 50S ribosomal protein L21
- Chain Y2
- 50S ribosomal protein L30
- Chain d2
- 50S ribosomal protein L35
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