J6_6GZX_011
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCCC*GCCUAGUGAACCGG*UCGAUCAACGGAUAAAA
- Length
- 46 nucleotides
- Bulged bases
- 6GZX|1|A1|U|2100, 6GZX|1|A1|A|2402, 6GZX|1|A1|U|2404, 6GZX|1|A1|G|2442, 6GZX|1|A1|A|2444, 6GZX|1|A1|U|2445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A1|U|2098
6GZX|1|A1|U|2099
6GZX|1|A1|U|2100
6GZX|1|A1|A|2101
*
6GZX|1|A1|U|2257
6GZX|1|A1|U|2258
6GZX|1|A1|U|2259
6GZX|1|A1|G|2260
*
6GZX|1|A1|C|2272
6GZX|1|A1|G|2273
*
6GZX|1|A1|C|2295
6GZX|1|A1|G|2296
6GZX|1|A1|C|2297
6GZX|1|A1|C|2298
6GZX|1|A1|C|2299
*
6GZX|1|A1|G|2398
6GZX|1|A1|C|2399
6GZX|1|A1|C|2400
6GZX|1|A1|U|2401
6GZX|1|A1|A|2402
6GZX|1|A1|G|2403
6GZX|1|A1|U|2404
6GZX|1|A1|G|2405
6GZX|1|A1|A|2406
6GZX|1|A1|A|2407
6GZX|1|A1|C|2408
6GZX|1|A1|C|2409
6GZX|1|A1|G|2410
6GZX|1|A1|G|2411
*
6GZX|1|A1|U|2433
6GZX|1|A1|C|2434
6GZX|1|A1|G|2435
6GZX|1|A1|A|2436
6GZX|1|A1|U|2437
6GZX|1|A1|C|2438
6GZX|1|A1|A|2439
6GZX|1|A1|A|2440
6GZX|1|A1|C|2441
6GZX|1|A1|G|2442
6GZX|1|A1|G|2443
6GZX|1|A1|A|2444
6GZX|1|A1|U|2445
6GZX|1|A1|A|2446
6GZX|1|A1|A|2447
6GZX|1|A1|A|2448
6GZX|1|A1|A|2449
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain C1
- 50S ribosomal protein L2
- Chain K1
- 50S ribosomal protein L15
- Chain V1
- 50S ribosomal protein L27
- Chain W1
- 50S ribosomal protein L28
- Chain b1
- 50S ribosomal protein L33
- Chain d1
- 50S ribosomal protein L35
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