J6_6GZX_012

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGAGCC*GGGAACC*GAGGAGAGGAAAG*CGACUC*GACCAG*CUAAGUACUCCGG

Length

52 nucleotides

Bulged bases

6GZX|1|A2|A|213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|40
6GZX|1|A2|C|41
6GZX|1|A2|G|42
6GZX|1|A2|A|43
6GZX|1|A2|G|44
6GZX|1|A2|C|45
6GZX|1|A2|C|46
*
6GZX|1|A2|G|168
6GZX|1|A2|G|169
6GZX|1|A2|G|170
6GZX|1|A2|A|171
6GZX|1|A2|A|172
6GZX|1|A2|C|173
6GZX|1|A2|C|174
*
6GZX|1|A2|G|202
6GZX|1|A2|A|203
6GZX|1|A2|G|204
6GZX|1|A2|G|205
6GZX|1|A2|A|206
6GZX|1|A2|G|207
6GZX|1|A2|A|208
6GZX|1|A2|G|209
6GZX|1|A2|G|210
6GZX|1|A2|A|211
6GZX|1|A2|A|212
6GZX|1|A2|A|213
6GZX|1|A2|G|214
*
6GZX|1|A2|C|221
6GZX|1|A2|G|222
6GZX|1|A2|A|223
6GZX|1|A2|C|224
6GZX|1|A2|U|225
6GZX|1|A2|C|226
*
6GZX|1|A2|G|251
6GZX|1|A2|A|252
6GZX|1|A2|C|253
6GZX|1|A2|C|254
6GZX|1|A2|A|255
6GZX|1|A2|G|256
*
6GZX|1|A2|C|455
6GZX|1|A2|U|456
6GZX|1|A2|A|457
6GZX|1|A2|A|458
6GZX|1|A2|G|459
6GZX|1|A2|U|460
6GZX|1|A2|A|461
6GZX|1|A2|C|462
6GZX|1|A2|U|463
6GZX|1|A2|C|464
6GZX|1|A2|C|465
6GZX|1|A2|G|466
6GZX|1|A2|G|467

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain c2

50S ribosomal protein L34