J6_6GZX_013

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUUUAC*GUUUG*CG*CGCCC*GCCUAGUGAACCG*CGAUCAACGGAUAAAAG

Length

48 nucleotides

Bulged bases

6GZX|1|A2|U|2100, 6GZX|1|A2|A|2402, 6GZX|1|A2|U|2404, 6GZX|1|A2|G|2442, 6GZX|1|A2|A|2444, 6GZX|1|A2|U|2445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|2097
6GZX|1|A2|U|2098
6GZX|1|A2|U|2099
6GZX|1|A2|U|2100
6GZX|1|A2|A|2101
6GZX|1|A2|C|2102
*
6GZX|1|A2|G|2256
6GZX|1|A2|U|2257
6GZX|1|A2|U|2258
6GZX|1|A2|U|2259
6GZX|1|A2|G|2260
*
6GZX|1|A2|C|2272
6GZX|1|A2|G|2273
*
6GZX|1|A2|C|2295
6GZX|1|A2|G|2296
6GZX|1|A2|C|2297
6GZX|1|A2|C|2298
6GZX|1|A2|C|2299
*
6GZX|1|A2|G|2398
6GZX|1|A2|C|2399
6GZX|1|A2|C|2400
6GZX|1|A2|U|2401
6GZX|1|A2|A|2402
6GZX|1|A2|G|2403
6GZX|1|A2|U|2404
6GZX|1|A2|G|2405
6GZX|1|A2|A|2406
6GZX|1|A2|A|2407
6GZX|1|A2|C|2408
6GZX|1|A2|C|2409
6GZX|1|A2|G|2410
*
6GZX|1|A2|C|2434
6GZX|1|A2|G|2435
6GZX|1|A2|A|2436
6GZX|1|A2|U|2437
6GZX|1|A2|C|2438
6GZX|1|A2|A|2439
6GZX|1|A2|A|2440
6GZX|1|A2|C|2441
6GZX|1|A2|G|2442
6GZX|1|A2|G|2443
6GZX|1|A2|A|2444
6GZX|1|A2|U|2445
6GZX|1|A2|A|2446
6GZX|1|A2|A|2447
6GZX|1|A2|A|2448
6GZX|1|A2|A|2449
6GZX|1|A2|G|2450

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain K2

50S ribosomal protein L15

Chain V2

50S ribosomal protein L27

Chain W2

50S ribosomal protein L28

Chain b2

50S ribosomal protein L33

Chain d2

50S ribosomal protein L35