J6_6HCF_002
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAGAAGGGUUC*GGUCAGUCGGUC*GGAGUC*GAAUC*GGCCGUACCCAUAUC*GUCUC
- Length
- 54 nucleotides
- Bulged bases
- 6HCF|1|52|C|2437, 6HCF|1|52|U|2788, 6HCF|1|52|A|2789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|2400
6HCF|1|52|A|2401
6HCF|1|52|G|2402
6HCF|1|52|A|2403
6HCF|1|52|A|2404
6HCF|1|52|G|2405
6HCF|1|52|G|2406
6HCF|1|52|G|2407
6HCF|1|52|U|2408
6HCF|1|52|U|2409
6HCF|1|52|C|2410
*
6HCF|1|52|G|2434
6HCF|1|52|G|2435
6HCF|1|52|U|2436
6HCF|1|52|C|2437
6HCF|1|52|A|2438
6HCF|1|52|G|2439
6HCF|1|52|U|2440
6HCF|1|52|C|2441
6HCF|1|52|G|2442
6HCF|1|52|G|2443
6HCF|1|52|U|2444
6HCF|1|52|C|2445
*
6HCF|1|52|G|2515
6HCF|1|52|G|2516
6HCF|1|52|A|2517
6HCF|1|52|G|2518
6HCF|1|52|U|2519
6HCF|1|52|C|2520
*
6HCF|1|52|G|2535
6HCF|1|52|A|2536
6HCF|1|52|A|2537
6HCF|1|52|U|2538
6HCF|1|52|C|2539
*
6HCF|1|52|G|2777
6HCF|1|52|G|2778
6HCF|1|52|C|2779
6HCF|1|52|C|2780
6HCF|1|52|G|2781
6HCF|1|52|U|2782
6HCF|1|52|A|2783
6HCF|1|52|C|2784
6HCF|1|52|C|2785
6HCF|1|52|C|2786
6HCF|1|52|A|2787
6HCF|1|52|U|2788
6HCF|1|52|A|2789
6HCF|1|52|U|2790
6HCF|1|52|C|2791
*
6HCF|1|52|G|2800
6HCF|1|52|U|2801
6HCF|1|52|C|2802
6HCF|1|52|U|2803
6HCF|1|52|C|2804
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R3
- eL19
- Chain X3
- uL23
- Chain g3
- eL34
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain k3
- eL38
- Chain l3
- eL39
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