Loop J6_6HCF

3D structure

PDB id: 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: CGAG*CGCAA*UGAAG*CGAGGUGGGAUC*GCGCACCACCGGCCCGUC*GGUGGAGCACGAG
Length: 57 nucleotides
Bulged bases: 6HCF|1|52|A|1497, 6HCF|1|52|C|1501
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCF|1|52|C|1352
6HCF|1|52|G|1353
6HCF|1|52|A|1354
6HCF|1|52|G|1355
*
6HCF|1|52|C|1384
6HCF|1|52|G|1385
6HCF|1|52|C|1386
6HCF|1|52|A|1387
6HCF|1|52|A|1388
*
6HCF|1|52|U|1395
6HCF|1|52|G|1396
6HCF|1|52|A|1397
6HCF|1|52|A|1398
6HCF|1|52|G|1399
*
6HCF|1|52|C|1418
6HCF|1|52|G|1419
6HCF|1|52|A|1420
6HCF|1|52|G|1421
6HCF|1|52|G|1422
6HCF|1|52|U|1423
6HCF|1|52|G|1424
6HCF|1|52|G|1425
6HCF|1|52|G|1426
6HCF|1|52|A|1427
6HCF|1|52|U|1428
6HCF|1|52|C|1429
*
6HCF|1|52|G|1455
6HCF|1|52|C|1456
6HCF|1|52|G|1457
6HCF|1|52|C|1458
6HCF|1|52|A|1459
6HCF|1|52|C|1460
6HCF|1|52|C|1461
6HCF|1|52|A|1462
6HCF|1|52|C|1463
6HCF|1|52|C|1464
6HCF|1|52|G|1465
6HCF|1|52|G|1466
6HCF|1|52|C|1467
6HCF|1|52|C|1468
6HCF|1|52|C|1469
6HCF|1|52|G|1470
6HCF|1|52|U|1471
6HCF|1|52|C|1472
*
6HCF|1|52|G|1492
6HCF|1|52|G|1493
6HCF|1|52|U|1494
6HCF|1|52|G|1495
6HCF|1|52|G|1496
6HCF|1|52|A|1497
6HCF|1|52|G|1498
6HCF|1|52|C|1499
6HCF|1|52|A|1500
6HCF|1|52|C|1501
6HCF|1|52|G|1502
6HCF|1|52|A|1503
6HCF|1|52|G|1504

Current chains

Chain 52: 28S ribosomal RNA

Nearby chains

Chain C3: uL4
Chain L3: eL13
Chain Q3: eL18
Chain a3: uL15
Chain b3: eL29
Chain i3: 60S ribosomal protein L36

J6_6HCF_004