J6_6HCF_006
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAGCUUGACUCUAG*UGGGGAGUUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAAGUUACCA
- Length
- 63 nucleotides
- Bulged bases
- 6HCF|1|52|G|3922, 6HCF|1|52|A|4376, 6HCF|1|52|A|4378, 6HCF|1|52|A|4379, 6HCF|1|52|A|4385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|U|3915
6HCF|1|52|G|3916
6HCF|1|52|A|3917
6HCF|1|52|G|3918
6HCF|1|52|C|3919
6HCF|1|52|U|3920
6HCF|1|52|U|3921
6HCF|1|52|G|3922
6HCF|1|52|A|3923
6HCF|1|52|C|3924
6HCF|1|52|U|3925
6HCF|1|52|C|3926
6HCF|1|52|U|3927
6HCF|1|52|A|3928
6HCF|1|52|G|3929
*
6HCF|1|52|U|4181
6HCF|1|52|G|4182
6HCF|1|52|G|4183
6HCF|1|52|G|4184
6HCF|1|52|G|4185
6HCF|1|52|A|4186
6HCF|1|52|G|4187
6HCF|1|52|U|4188
6HCF|1|52|U|4189
6HCF|1|52|U|4190
6HCF|1|52|G|4191
*
6HCF|1|52|C|4204
6HCF|1|52|A|4205
*
6HCF|1|52|U|4227
6HCF|1|52|G|4228
6HCF|1|52|U|4229
6HCF|1|52|C|4230
*
6HCF|1|52|G|4331
6HCF|1|52|C|4332
6HCF|1|52|C|4333
6HCF|1|52|U|4334
6HCF|1|52|C|4335
6HCF|1|52|A|4336
6HCF|1|52|C|4337
6HCF|1|52|G|4338
6HCF|1|52|A|4339
6HCF|1|52|U|4340
6HCF|1|52|C|4341
6HCF|1|52|C|4342
*
6HCF|1|52|G|4370
6HCF|1|52|G|4371
6HCF|1|52|U|4372
6HCF|1|52|G|4373
6HCF|1|52|U|4374
6HCF|1|52|C|4375
6HCF|1|52|A|4376
6HCF|1|52|G|4377
6HCF|1|52|A|4378
6HCF|1|52|A|4379
6HCF|1|52|A|4380
6HCF|1|52|A|4381
6HCF|1|52|G|4382
6HCF|1|52|U|4383
6HCF|1|52|U|4384
6HCF|1|52|A|4385
6HCF|1|52|C|4386
6HCF|1|52|C|4387
6HCF|1|52|A|4388
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain T3
- eL21
- Chain a3
- uL15
- Chain o3
- eL42
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